BESC Data & Toolsv2.0
BESC | BeoCyc
BeoCyc is a collection of Pathway/Genome Databases (PGDBs) of sequenced BioEnergy related organisms. The PGDBs were generated using the Pathway Tools software. Enzymes and gene names were predicted using KEGG orthology.
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Other Databases
Populus trichocarpa (Genome annotation version1)
Populus trichocarpa (Genome annotation version3)
Panicum virgatum (Switchgrass - genome annotation version1)
Clostridium strains
Clostridium thermocellum ATCC 27405 ( Anaerobic thermophile degrading crystalline cellulose )
Clostridium thermocellum DSM 1313 (Emerging model for genetic manipulations)
Clostridium thermocellum DSM 2360 (Also known as LQRI; tolerant to high ethanol concentrations)
Clostridium thermocellum DSM 4150 (Also known as C. thermocellum JW20 and C.thermocellum ATCC 31549)
Clostridium acetobutylicum ATCC 824 ( Industrial producer of starch-based acetone, butanol, and ethanol )
Clostridium beijerinckii NCIMB 8052 ( Industrial solvent-producing bacterium utilizing saccharose, dextrin, and pectin )
Clostridium carboxidivorans P7 (Acetogen; ferments synthesis gas and a variety of simple sugars to ethanol)
Clostridium cellulolyticum H10 (Mesophilic anaerobic bacterium isolated from compost)
Clostridium cellulovorans 743B (Mesophilic anaerobic bacterium isolated from a wood chip pile)
Clostridium papyrosolvens DSM 2782 (Mesophilic anaerobic bacterium isolated from anoxic sediments)
Clostridium phytofermentans ISDg (Soil bacterium degrading cellulose)
Other BioEnergy Related Bacteria
Caldicellulosiruptor bescii DSM 6725 (Also known as Anaerocellum thermophilum DSM 6725; a producer of thermostable enzymes degrading cellulose and starches)
Caldicellulosiruptor saccharolyticus DSM 8903 ( Anaerobic cellulolytic thermphile )
Thermoanaerobacter tengcongensis MB4 ( Anaerobic motile thermophile producing acetate and ethanol )
Thermoanaerobacterium thermosaccharolyticum DSM 571 (Degrader of starch, amylose and pullulan)
Zymomonas mobilis ZM4 ( Anaerobic ethanol tolerant bacterium utilizing different sugars including xylose using the Enter-Doudoroff pathway )
Zymomonas mobilis NCIMB 11163 (A British ale-infecting isolate)
External Databases
BioCyc (Collection of microbial Pathway Genome Databases)
Gramene (RiceCyc, SorghumCyc, MedicCyc, and others)
SolCyc (Collection of Pathway Genome Databases for Solanaceae species)
MetaCyc (A database experimentally elucidated metabolic pathways)
PlantCyc (AraCyc and a collection of plant Pathway Genome Databases)
YeastCyc (YeastCyc is a collection of manually curated metabolic pathways and enzymes of Saccharomyces cerevisiae.)
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